INCISIVE Implementation Guide
0.1.1 - draft

INCISIVE Implementation Guide - Local Development build (v0.1.1) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

Logical Model: Tumor profile result Colorectal

Official URL: https://fhir.incisive-project.eu/StructureDefinition/ColorectalTumorProfileResultLogicalModel Version: 0.1.1
Draft as of 2024-03-19 Computable Name: ColorectalTumorProfileResultLogicalModel

INCISIVE based logical model for the tumor profile result of Colorectal cancer

Usage:

  • This Logical Model Profile is not used by any profiles in this Implementation Guide

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

This structure is derived from Base

NameFlagsCard.TypeDescription & Constraintsdoco
.. ColorectalTumorProfileResultLogicalModel 0..*BaseTumor profile result Colorectal
Instances of this logical model are not marked to be the target of a Reference
... tumorProfileResultID 1..1IdentifierAn identifier for the tumor profile result
... patientID 1..1INCISIVEPatientLogicalModelINCISIVE patient
... mmr 0..1booleanDNA mismatch repair protein Msh3 [Presence] in Cancer specimen by Immune stain
... pik3ca 0..1booleanPIK3CA gene [VCF] in Cancer specimen by Sequencing
... tgfbr 0..1booleanTGFBR1 gene+TGFBR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method
... Loh18q 0..1boolean18q chromosome deletion [Identifier] in Blood or Tissue by Molecular genetics method Nominal
... tp53 0..1booleanTP53 gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal
... apc 0..1booleanGSTP1 gene+APC gene methylation [Presence] in Tissue by Molecular genetics method
... kRas 0..1booleanKRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraintsdoco
.. ColorectalTumorProfileResultLogicalModel 0..*BaseTumor profile result Colorectal
Instances of this logical model are not marked to be the target of a Reference
... tumorProfileResultID 1..1IdentifierAn identifier for the tumor profile result
... patientID 1..1INCISIVEPatientLogicalModelINCISIVE patient
... mmr 0..1booleanDNA mismatch repair protein Msh3 [Presence] in Cancer specimen by Immune stain
... pik3ca 0..1booleanPIK3CA gene [VCF] in Cancer specimen by Sequencing
... tgfbr 0..1booleanTGFBR1 gene+TGFBR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method
... Loh18q 0..1boolean18q chromosome deletion [Identifier] in Blood or Tissue by Molecular genetics method Nominal
... tp53 0..1booleanTP53 gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal
... apc 0..1booleanGSTP1 gene+APC gene methylation [Presence] in Tissue by Molecular genetics method
... kRas 0..1booleanKRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraintsdoco
.. ColorectalTumorProfileResultLogicalModel 0..*BaseTumor profile result Colorectal
Instances of this logical model are not marked to be the target of a Reference
... tumorProfileResultID 1..1IdentifierAn identifier for the tumor profile result
... patientID 1..1INCISIVEPatientLogicalModelINCISIVE patient
... mmr 0..1booleanDNA mismatch repair protein Msh3 [Presence] in Cancer specimen by Immune stain
... pik3ca 0..1booleanPIK3CA gene [VCF] in Cancer specimen by Sequencing
... tgfbr 0..1booleanTGFBR1 gene+TGFBR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method
... Loh18q 0..1boolean18q chromosome deletion [Identifier] in Blood or Tissue by Molecular genetics method Nominal
... tp53 0..1booleanTP53 gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal
... apc 0..1booleanGSTP1 gene+APC gene methylation [Presence] in Tissue by Molecular genetics method
... kRas 0..1booleanKRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal

doco Documentation for this format

This structure is derived from Base

Summary

Mandatory: 0 element (2 nested mandatory elements)

Differential View

This structure is derived from Base

NameFlagsCard.TypeDescription & Constraintsdoco
.. ColorectalTumorProfileResultLogicalModel 0..*BaseTumor profile result Colorectal
Instances of this logical model are not marked to be the target of a Reference
... tumorProfileResultID 1..1IdentifierAn identifier for the tumor profile result
... patientID 1..1INCISIVEPatientLogicalModelINCISIVE patient
... mmr 0..1booleanDNA mismatch repair protein Msh3 [Presence] in Cancer specimen by Immune stain
... pik3ca 0..1booleanPIK3CA gene [VCF] in Cancer specimen by Sequencing
... tgfbr 0..1booleanTGFBR1 gene+TGFBR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method
... Loh18q 0..1boolean18q chromosome deletion [Identifier] in Blood or Tissue by Molecular genetics method Nominal
... tp53 0..1booleanTP53 gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal
... apc 0..1booleanGSTP1 gene+APC gene methylation [Presence] in Tissue by Molecular genetics method
... kRas 0..1booleanKRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal

doco Documentation for this format

Key Elements View

NameFlagsCard.TypeDescription & Constraintsdoco
.. ColorectalTumorProfileResultLogicalModel 0..*BaseTumor profile result Colorectal
Instances of this logical model are not marked to be the target of a Reference
... tumorProfileResultID 1..1IdentifierAn identifier for the tumor profile result
... patientID 1..1INCISIVEPatientLogicalModelINCISIVE patient
... mmr 0..1booleanDNA mismatch repair protein Msh3 [Presence] in Cancer specimen by Immune stain
... pik3ca 0..1booleanPIK3CA gene [VCF] in Cancer specimen by Sequencing
... tgfbr 0..1booleanTGFBR1 gene+TGFBR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method
... Loh18q 0..1boolean18q chromosome deletion [Identifier] in Blood or Tissue by Molecular genetics method Nominal
... tp53 0..1booleanTP53 gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal
... apc 0..1booleanGSTP1 gene+APC gene methylation [Presence] in Tissue by Molecular genetics method
... kRas 0..1booleanKRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraintsdoco
.. ColorectalTumorProfileResultLogicalModel 0..*BaseTumor profile result Colorectal
Instances of this logical model are not marked to be the target of a Reference
... tumorProfileResultID 1..1IdentifierAn identifier for the tumor profile result
... patientID 1..1INCISIVEPatientLogicalModelINCISIVE patient
... mmr 0..1booleanDNA mismatch repair protein Msh3 [Presence] in Cancer specimen by Immune stain
... pik3ca 0..1booleanPIK3CA gene [VCF] in Cancer specimen by Sequencing
... tgfbr 0..1booleanTGFBR1 gene+TGFBR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method
... Loh18q 0..1boolean18q chromosome deletion [Identifier] in Blood or Tissue by Molecular genetics method Nominal
... tp53 0..1booleanTP53 gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal
... apc 0..1booleanGSTP1 gene+APC gene methylation [Presence] in Tissue by Molecular genetics method
... kRas 0..1booleanKRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal

doco Documentation for this format

This structure is derived from Base

Summary

Mandatory: 0 element (2 nested mandatory elements)

 

Other representations of profile: CSV, Excel

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