INCISIVE Implementation Guide
0.1.1 - draft
INCISIVE Implementation Guide
0.1.1 - draft
INCISIVE Implementation Guide - Local Development build (v0.1.1) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Draft as of 2024-03-19 |
<ConceptMap xmlns="http://hl7.org/fhir">
<id value="ColorectalTumorProfileResultConceptMap"/>
<text>
<status value="extensions"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p>Mapping from <a href="StructureDefinition-ColorectalTumorProfileResultLogicalModel.html">Tumor profile result Colorectal</a> to <a href="StructureDefinition-ObservationForColorectal.html">Observation for Colorectal cancer</a></p><p>DRAFT (not intended for production usage). Published on 2024-03-19 13:26:22+0100 by INCISIVE (INCISIVE: <a href="https://incisive-project.eu/">https://incisive-project.eu/</a>, <a href="mailto:fhir@incisive-project.eu">fhir@incisive-project.eu</a>). </p><div><p>Tumor profile result model of Colorectal cancer to the FHIR Profile map</p>
</div><br/><p><b>Group 1</b>Mapping from <a href="StructureDefinition-ColorectalTumorProfileResultLogicalModel.html">Tumor profile result Colorectal</a> to <a href="StructureDefinition-ObservationForColorectal.html">Observation for Colorectal cancer</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.tumorProfileResultID (An identifier for the tumor profile result)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Observation.id</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.patientID (INCISIVE patient)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent" title="equivalent">is equivalent to</a></td><td>Observation.subject.reference</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.mmr (DNA mismatch repair protein Msh3 [Presence] in Cancer specimen by Immune stain)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.msi (Microsatellite markers exhibiting instability/Microsatellite instability markers assessed in Cancer specimen)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.pik3ca (PIK3CA gene [VCF] in Cancer specimen by Sequencing)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.tgfbr (TGFBR1 gene+TGFBR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.Loh18q (18q chromosome deletion [Identifier] in Blood or Tissue by Molecular genetics method Nominal)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.tp53 (TP53 gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.apc (GSTP1 gene+APC gene methylation [Presence] in Tissue by Molecular genetics method)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.kRas (KRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal)</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto" title="relatedto">is related to</a></td><td>Observation.component.valueBoolean</td></tr></table></div>
</text>
<url
value="https://fhir.incisive-project.eu/ConceptMap/ColorectalTumorProfileResultConceptMap"/>
<version value="0.1.1"/>
<name value="ColorectalTumorProfileResultConceptMap"/>
<title
value="Tumor profile result model of Colorectal cancer to the FHIR Profile map"/>
<status value="draft"/>
<experimental value="true"/>
<date value="2024-03-19T13:26:22+01:00"/>
<publisher value="INCISIVE"/>
<contact>
<name value="INCISIVE"/>
<telecom>
<system value="url"/>
<value value="https://incisive-project.eu/"/>
</telecom>
<telecom>
<system value="email"/>
<value value="fhir@incisive-project.eu"/>
</telecom>
</contact>
<description
value="Tumor profile result model of Colorectal cancer to the FHIR Profile map"/>
<purpose
value="It shows how the tumor profile result model of Colorectal cancer is mapped into the FHIR Profile/structureDefinition"/>
<sourceUri
value="https://fhir.incisive-project.eu/StructureDefinition/ColorectalTumorProfileResultLogicalModel"/>
<targetUri
value="https://fhir.incisive-project.eu/StructureDefinition/ObservationForColorectal"/>
<group>
<source
value="https://fhir.incisive-project.eu/StructureDefinition/ColorectalTumorProfileResultLogicalModel"/>
<target
value="https://fhir.incisive-project.eu/StructureDefinition/ObservationForColorectal"/>
<element>
<code
value="ColorectalTumorProfileResultLogicalModel.tumorProfileResultID"/>
<display value="An identifier for the tumor profile result"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code value="Observation.id"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="ColorectalTumorProfileResultLogicalModel.patientID"/>
<display value="INCISIVE patient"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="equivalent"/>
</modifierExtension>
<code value="Observation.subject.reference"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="ColorectalTumorProfileResultLogicalModel.mmr"/>
<display
value="DNA mismatch repair protein Msh3 [Presence] in Cancer specimen by Immune stain"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code value="Observation.component.valueBoolean"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="ColorectalTumorProfileResultLogicalModel.msi"/>
<display
value="Microsatellite markers exhibiting instability/Microsatellite instability markers assessed in Cancer specimen"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code value="Observation.component.valueBoolean"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="ColorectalTumorProfileResultLogicalModel.pik3ca"/>
<display value="PIK3CA gene [VCF] in Cancer specimen by Sequencing"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code value="Observation.component.valueBoolean"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="ColorectalTumorProfileResultLogicalModel.tgfbr"/>
<display
value="TGFBR1 gene+TGFBR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code value="Observation.component.valueBoolean"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="ColorectalTumorProfileResultLogicalModel.Loh18q"/>
<display
value="18q chromosome deletion [Identifier] in Blood or Tissue by Molecular genetics method Nominal"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code value="Observation.component.valueBoolean"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="ColorectalTumorProfileResultLogicalModel.tp53"/>
<display
value="TP53 gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code value="Observation.component.valueBoolean"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="ColorectalTumorProfileResultLogicalModel.apc"/>
<display
value="GSTP1 gene+APC gene methylation [Presence] in Tissue by Molecular genetics method"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code value="Observation.component.valueBoolean"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="ColorectalTumorProfileResultLogicalModel.kRas"/>
<display
value="KRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal"/>
<target>
<modifierExtension
url="http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence">
<valueCode value="relatedto"/>
</modifierExtension>
<code value="Observation.component.valueBoolean"/>
<equivalence value="relatedto"/>
</target>
</element>
</group>
</ConceptMap>
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