INCISIVE Implementation Guide - Local Development build (v0.1.1) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

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: Tumor profile result model of Colorectal cancer to the FHIR Profile map - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:ConceptMap ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "ColorectalTumorProfileResultConceptMap"] ; # 
  fhir:text [
fhir:status [ fhir:v "extensions" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>Mapping from <a href=\"StructureDefinition-ColorectalTumorProfileResultLogicalModel.html\">Tumor profile result Colorectal</a> to <a href=\"StructureDefinition-ObservationForColorectal.html\">Observation for Colorectal cancer</a></p><p>DRAFT (not intended for production usage). Published on 2024-03-19 13:26:22+0100 by INCISIVE (INCISIVE: <a href=\"https://incisive-project.eu/\">https://incisive-project.eu/</a>, <a href=\"mailto:fhir@incisive-project.eu\">fhir@incisive-project.eu</a>). </p><div><p>Tumor profile result model of Colorectal cancer to the FHIR Profile map</p>\n</div><br/><p><b>Group 1</b>Mapping from <a href=\"StructureDefinition-ColorectalTumorProfileResultLogicalModel.html\">Tumor profile result Colorectal</a> to <a href=\"StructureDefinition-ObservationForColorectal.html\">Observation for Colorectal cancer</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.tumorProfileResultID (An identifier for the tumor profile result)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.id</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.patientID (INCISIVE patient)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Observation.subject.reference</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.mmr (DNA mismatch repair protein Msh3 [Presence] in Cancer specimen by Immune stain)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.msi (Microsatellite markers exhibiting instability/Microsatellite instability markers assessed in Cancer specimen)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.pik3ca (PIK3CA gene [VCF] in Cancer specimen by Sequencing)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.tgfbr (TGFBR1 gene+TGFBR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.Loh18q (18q chromosome deletion [Identifier] in Blood or Tissue by Molecular genetics method Nominal)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.tp53 (TP53 gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.apc (GSTP1 gene+APC gene methylation [Presence] in Tissue by Molecular genetics method)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.kRas (KRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr></table></div>"
  ] ; # 
  fhir:url [ fhir:v "https://fhir.incisive-project.eu/ConceptMap/ColorectalTumorProfileResultConceptMap"^^xsd:anyURI] ; # 
  fhir:version [ fhir:v "0.1.1"] ; # 
  fhir:name [ fhir:v "ColorectalTumorProfileResultConceptMap"] ; # 
  fhir:title [ fhir:v "Tumor profile result model of Colorectal cancer to the FHIR Profile map"] ; # 
  fhir:status [ fhir:v "draft"] ; # 
  fhir:experimental [ fhir:v "true"^^xsd:boolean] ; # 
  fhir:date [ fhir:v "2024-03-19T13:26:22+01:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "INCISIVE"] ; # 
  fhir:contact ( [
fhir:name [ fhir:v "INCISIVE" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "https://incisive-project.eu/" ]     ] [
fhir:system [ fhir:v "email" ] ;
fhir:value [ fhir:v "fhir@incisive-project.eu" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "Tumor profile result model of Colorectal cancer to the FHIR Profile map"] ; # 
  fhir:purpose [ fhir:v "It shows how the tumor profile result model of Colorectal cancer is mapped into the FHIR Profile/structureDefinition"] ; # 
  fhir:source [ fhir:v "https://fhir.incisive-project.eu/StructureDefinition/ColorectalTumorProfileResultLogicalModel"^^xsd:anyURI] ; # 
  fhir:target [ fhir:v "https://fhir.incisive-project.eu/StructureDefinition/ObservationForColorectal"^^xsd:anyURI] ; # 
  fhir:group ( [
fhir:source [ fhir:v "https://fhir.incisive-project.eu/StructureDefinition/ColorectalTumorProfileResultLogicalModel"^^xsd:anyURI ] ;
fhir:target [ fhir:v "https://fhir.incisive-project.eu/StructureDefinition/ObservationForColorectal"^^xsd:anyURI ] ;
    ( fhir:element [
fhir:code [ fhir:v "ColorectalTumorProfileResultLogicalModel.tumorProfileResultID" ] ;
fhir:display [ fhir:v "An identifier for the tumor profile result" ] ;
      ( fhir:_target [
        ( fhir:modifierExtension [
fhir:url [ fhir:v "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence"^^xsd:anyURI ] ;
fhir:value [ fhir:v "relatedto" ]         ] ) ;
fhir:code [ fhir:v "Observation.id" ] ;
fhir:equivalence [ fhir:v "relatedto" ]       ] )     ] [
fhir:code [ fhir:v "ColorectalTumorProfileResultLogicalModel.patientID" ] ;
fhir:display [ fhir:v "INCISIVE patient" ] ;
      ( fhir:_target [
        ( fhir:modifierExtension [
fhir:url [ fhir:v "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence"^^xsd:anyURI ] ;
fhir:value [ fhir:v "equivalent" ]         ] ) ;
fhir:code [ fhir:v "Observation.subject.reference" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "ColorectalTumorProfileResultLogicalModel.mmr" ] ;
fhir:display [ fhir:v "DNA mismatch repair protein Msh3 [Presence] in Cancer specimen by Immune stain" ] ;
      ( fhir:_target [
        ( fhir:modifierExtension [
fhir:url [ fhir:v "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence"^^xsd:anyURI ] ;
fhir:value [ fhir:v "relatedto" ]         ] ) ;
fhir:code [ fhir:v "Observation.component.valueBoolean" ] ;
fhir:equivalence [ fhir:v "relatedto" ]       ] )     ] [
fhir:code [ fhir:v "ColorectalTumorProfileResultLogicalModel.msi" ] ;
fhir:display [ fhir:v "Microsatellite markers exhibiting instability/Microsatellite instability markers assessed in Cancer specimen" ] ;
      ( fhir:_target [
        ( fhir:modifierExtension [
fhir:url [ fhir:v "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence"^^xsd:anyURI ] ;
fhir:value [ fhir:v "relatedto" ]         ] ) ;
fhir:code [ fhir:v "Observation.component.valueBoolean" ] ;
fhir:equivalence [ fhir:v "relatedto" ]       ] )     ] [
fhir:code [ fhir:v "ColorectalTumorProfileResultLogicalModel.pik3ca" ] ;
fhir:display [ fhir:v "PIK3CA gene [VCF] in Cancer specimen by Sequencing" ] ;
      ( fhir:_target [
        ( fhir:modifierExtension [
fhir:url [ fhir:v "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence"^^xsd:anyURI ] ;
fhir:value [ fhir:v "relatedto" ]         ] ) ;
fhir:code [ fhir:v "Observation.component.valueBoolean" ] ;
fhir:equivalence [ fhir:v "relatedto" ]       ] )     ] [
fhir:code [ fhir:v "ColorectalTumorProfileResultLogicalModel.tgfbr" ] ;
fhir:display [ fhir:v "TGFBR1 gene+TGFBR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method" ] ;
      ( fhir:_target [
        ( fhir:modifierExtension [
fhir:url [ fhir:v "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence"^^xsd:anyURI ] ;
fhir:value [ fhir:v "relatedto" ]         ] ) ;
fhir:code [ fhir:v "Observation.component.valueBoolean" ] ;
fhir:equivalence [ fhir:v "relatedto" ]       ] )     ] [
fhir:code [ fhir:v "ColorectalTumorProfileResultLogicalModel.Loh18q" ] ;
fhir:display [ fhir:v "18q chromosome deletion [Identifier] in Blood or Tissue by Molecular genetics method Nominal" ] ;
      ( fhir:_target [
        ( fhir:modifierExtension [
fhir:url [ fhir:v "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence"^^xsd:anyURI ] ;
fhir:value [ fhir:v "relatedto" ]         ] ) ;
fhir:code [ fhir:v "Observation.component.valueBoolean" ] ;
fhir:equivalence [ fhir:v "relatedto" ]       ] )     ] [
fhir:code [ fhir:v "ColorectalTumorProfileResultLogicalModel.tp53" ] ;
fhir:display [ fhir:v "TP53 gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal" ] ;
      ( fhir:_target [
        ( fhir:modifierExtension [
fhir:url [ fhir:v "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence"^^xsd:anyURI ] ;
fhir:value [ fhir:v "relatedto" ]         ] ) ;
fhir:code [ fhir:v "Observation.component.valueBoolean" ] ;
fhir:equivalence [ fhir:v "relatedto" ]       ] )     ] [
fhir:code [ fhir:v "ColorectalTumorProfileResultLogicalModel.apc" ] ;
fhir:display [ fhir:v "GSTP1 gene+APC gene methylation [Presence] in Tissue by Molecular genetics method" ] ;
      ( fhir:_target [
        ( fhir:modifierExtension [
fhir:url [ fhir:v "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence"^^xsd:anyURI ] ;
fhir:value [ fhir:v "relatedto" ]         ] ) ;
fhir:code [ fhir:v "Observation.component.valueBoolean" ] ;
fhir:equivalence [ fhir:v "relatedto" ]       ] )     ] [
fhir:code [ fhir:v "ColorectalTumorProfileResultLogicalModel.kRas" ] ;
fhir:display [ fhir:v "KRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal" ] ;
      ( fhir:_target [
        ( fhir:modifierExtension [
fhir:url [ fhir:v "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence"^^xsd:anyURI ] ;
fhir:value [ fhir:v "relatedto" ]         ] ) ;
fhir:code [ fhir:v "Observation.component.valueBoolean" ] ;
fhir:equivalence [ fhir:v "relatedto" ]       ] )     ] )
  ] ) . #