INCISIVE Implementation Guide
0.1.1 - draft
INCISIVE Implementation Guide
0.1.1 - draft
INCISIVE Implementation Guide - Local Development build (v0.1.1) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Draft as of 2024-03-19 |
{
"resourceType" : "ConceptMap",
"id" : "ColorectalTumorProfileResultConceptMap",
"text" : {
"status" : "extensions",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>Mapping from <a href=\"StructureDefinition-ColorectalTumorProfileResultLogicalModel.html\">Tumor profile result Colorectal</a> to <a href=\"StructureDefinition-ObservationForColorectal.html\">Observation for Colorectal cancer</a></p><p>DRAFT (not intended for production usage). Published on 2024-03-19 13:26:22+0100 by INCISIVE (INCISIVE: <a href=\"https://incisive-project.eu/\">https://incisive-project.eu/</a>, <a href=\"mailto:fhir@incisive-project.eu\">fhir@incisive-project.eu</a>). </p><div><p>Tumor profile result model of Colorectal cancer to the FHIR Profile map</p>\n</div><br/><p><b>Group 1</b>Mapping from <a href=\"StructureDefinition-ColorectalTumorProfileResultLogicalModel.html\">Tumor profile result Colorectal</a> to <a href=\"StructureDefinition-ObservationForColorectal.html\">Observation for Colorectal cancer</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.tumorProfileResultID (An identifier for the tumor profile result)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.id</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.patientID (INCISIVE patient)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Observation.subject.reference</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.mmr (DNA mismatch repair protein Msh3 [Presence] in Cancer specimen by Immune stain)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.msi (Microsatellite markers exhibiting instability/Microsatellite instability markers assessed in Cancer specimen)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.pik3ca (PIK3CA gene [VCF] in Cancer specimen by Sequencing)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.tgfbr (TGFBR1 gene+TGFBR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.Loh18q (18q chromosome deletion [Identifier] in Blood or Tissue by Molecular genetics method Nominal)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.tp53 (TP53 gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.apc (GSTP1 gene+APC gene methylation [Presence] in Tissue by Molecular genetics method)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr><tr><td>ColorectalTumorProfileResultLogicalModel.kRas (KRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal)</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.component.valueBoolean</td></tr></table></div>"
},
"url" : "https://fhir.incisive-project.eu/ConceptMap/ColorectalTumorProfileResultConceptMap",
"version" : "0.1.1",
"name" : "ColorectalTumorProfileResultConceptMap",
"title" : "Tumor profile result model of Colorectal cancer to the FHIR Profile map",
"status" : "draft",
"experimental" : true,
"date" : "2024-03-19T13:26:22+01:00",
"publisher" : "INCISIVE",
"contact" : [
{
"name" : "INCISIVE",
"telecom" : [
{
"system" : "url",
"value" : "https://incisive-project.eu/"
},
{
"system" : "email",
"value" : "fhir@incisive-project.eu"
}
]
}
],
"description" : "Tumor profile result model of Colorectal cancer to the FHIR Profile map",
"purpose" : "It shows how the tumor profile result model of Colorectal cancer is mapped into the FHIR Profile/structureDefinition",
"sourceUri" : "https://fhir.incisive-project.eu/StructureDefinition/ColorectalTumorProfileResultLogicalModel",
"targetUri" : "https://fhir.incisive-project.eu/StructureDefinition/ObservationForColorectal",
"group" : [
{
"source" : "https://fhir.incisive-project.eu/StructureDefinition/ColorectalTumorProfileResultLogicalModel",
"target" : "https://fhir.incisive-project.eu/StructureDefinition/ObservationForColorectal",
"element" : [
{
"code" : "ColorectalTumorProfileResultLogicalModel.tumorProfileResultID",
"display" : "An identifier for the tumor profile result",
"target" : [
{
"modifierExtension" : [
{
"url" : "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence",
"valueCode" : "relatedto"
}
],
"code" : "Observation.id",
"equivalence" : "relatedto"
}
]
},
{
"code" : "ColorectalTumorProfileResultLogicalModel.patientID",
"display" : "INCISIVE patient",
"target" : [
{
"modifierExtension" : [
{
"url" : "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence",
"valueCode" : "equivalent"
}
],
"code" : "Observation.subject.reference",
"equivalence" : "equivalent"
}
]
},
{
"code" : "ColorectalTumorProfileResultLogicalModel.mmr",
"display" : "DNA mismatch repair protein Msh3 [Presence] in Cancer specimen by Immune stain",
"target" : [
{
"modifierExtension" : [
{
"url" : "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence",
"valueCode" : "relatedto"
}
],
"code" : "Observation.component.valueBoolean",
"equivalence" : "relatedto"
}
]
},
{
"code" : "ColorectalTumorProfileResultLogicalModel.msi",
"display" : "Microsatellite markers exhibiting instability/Microsatellite instability markers assessed in Cancer specimen",
"target" : [
{
"modifierExtension" : [
{
"url" : "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence",
"valueCode" : "relatedto"
}
],
"code" : "Observation.component.valueBoolean",
"equivalence" : "relatedto"
}
]
},
{
"code" : "ColorectalTumorProfileResultLogicalModel.pik3ca",
"display" : "PIK3CA gene [VCF] in Cancer specimen by Sequencing",
"target" : [
{
"modifierExtension" : [
{
"url" : "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence",
"valueCode" : "relatedto"
}
],
"code" : "Observation.component.valueBoolean",
"equivalence" : "relatedto"
}
]
},
{
"code" : "ColorectalTumorProfileResultLogicalModel.tgfbr",
"display" : "TGFBR1 gene+TGFBR2 gene targeted mutation analysis in Blood or Tissue by Molecular genetics method",
"target" : [
{
"modifierExtension" : [
{
"url" : "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence",
"valueCode" : "relatedto"
}
],
"code" : "Observation.component.valueBoolean",
"equivalence" : "relatedto"
}
]
},
{
"code" : "ColorectalTumorProfileResultLogicalModel.Loh18q",
"display" : "18q chromosome deletion [Identifier] in Blood or Tissue by Molecular genetics method Nominal",
"target" : [
{
"modifierExtension" : [
{
"url" : "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence",
"valueCode" : "relatedto"
}
],
"code" : "Observation.component.valueBoolean",
"equivalence" : "relatedto"
}
]
},
{
"code" : "ColorectalTumorProfileResultLogicalModel.tp53",
"display" : "TP53 gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal",
"target" : [
{
"modifierExtension" : [
{
"url" : "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence",
"valueCode" : "relatedto"
}
],
"code" : "Observation.component.valueBoolean",
"equivalence" : "relatedto"
}
]
},
{
"code" : "ColorectalTumorProfileResultLogicalModel.apc",
"display" : "GSTP1 gene+APC gene methylation [Presence] in Tissue by Molecular genetics method",
"target" : [
{
"modifierExtension" : [
{
"url" : "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence",
"valueCode" : "relatedto"
}
],
"code" : "Observation.component.valueBoolean",
"equivalence" : "relatedto"
}
]
},
{
"code" : "ColorectalTumorProfileResultLogicalModel.kRas",
"display" : "KRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal",
"target" : [
{
"modifierExtension" : [
{
"url" : "http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence",
"valueCode" : "relatedto"
}
],
"code" : "Observation.component.valueBoolean",
"equivalence" : "relatedto"
}
]
}
]
}
]
}
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